All of the CPUs connections run into the system board. The system board is the closest thing my computer has to a motherboard or backplane. It’s primary job is to connect to every other peripheral component and correctly interconnect the CPU to each. It also provides some administrative services, such as connecting to the power supplys, offering debug pins, and connecting to the USB programming interface.
Here you can see some of the other modules connected to the system board, such as RAM, flash memory controllers, and the computer’s clock. Many homebrew computers use a crystal or 555 timer as their clock, so you may be surprised to see how complex my design’s clock is. The reason for this is, in order to provide many useful debugging features and an adjustable clock speed for maximizing CPU performance, this clock is a basic waveform generator:
There’s a lot more to this project than I can fit in one article. You can find out more my homemade CPU on my Hackaday page.